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Brief Report |

Morbidity and Mortality Associated With Nosocomial Transmission of Oseltamivir- Resistant Influenza A(H1N1) Virus FREE

Jairo Gooskens, MD; Marcel Jonges, MSc; Eric C. J. Claas, PhD; Adam Meijer, PhD; Peterhans J. van den Broek, MD, PhD; Aloys C. M. Kroes, MD, PhD
[+] Author Affiliations

Author Affiliations: Departments of Medical Microbiology (Drs Gooskens, Claas, and Kroes) and Infectious Diseases (Dr van den Broek), Center of Infectious Diseases, Leiden University Medical Center, Leiden, the Netherlands; and Section of Virology, National Institute for Public Health and the Environment, Bilthoven, the Netherlands (Mr Jonges and Dr Meijer).


JAMA. 2009;301(10):1042-1046. doi:10.1001/jama.2009.297.
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Published online

Context The sudden emergence and rapid spread of oseltamivir-resistant influenza A(H1N1) viruses with neuraminidase (NA) gene H274Y amino acid substitution is the hallmark of global seasonal influenza since January 2008. Viruses carrying this mutation are widely presumed to exhibit attenuated pathogenicity, compromised transmission, and reduced lethality.

Objective To investigate nosocomial viral transmission in a cluster of patients with influenza A(H1N1) virus infection.

Design, Setting, and Patients Descriptive outbreak investigation of 2 hematopoietic stem cell transplant recipients and an elderly patient who developed hospital-acquired influenza A virus infection following exposure to an index patient with community-acquired H274Y-mutated influenza A(H1N1) virus infection in a medical ward at a Dutch university hospital in February 2008. The investigation included a review of the medical records, influenza virus polymerase chain reaction and culture, phenotypic oseltamivir and zanamivir susceptibility determination, and hemagglutinin chain 1 (HA1) gene and NA gene sequence analysis.

Main Outcome Measure Phylogenetic relationship of patient cluster influenza A(H1N1) viruses and other 2007-2008 seasonal influenza A(H1N1) viruses.

Results Viral HA1 and NA gene sequence analysis from the 4 patients revealed indistinguishable nucleotide sequences and phylogenetic clustering of H274Y-mutated, oseltamivir-resistant influenza A(H1N1) virus, confirming nosocomial transmission. Influenza virus pneumonia (3 patients) and attributable mortality (2 patients) during active infection was observed in patients with lymphocytopenia at onset.

Conclusion Seasonal oseltamivir-resistant influenza A(H1N1) viruses with NA gene H274Y mutation are transmitted and retain significant pathogenicity and lethality in high-risk patients.

Conclusion Published online March 2, 2009 (doi:10.1001/jama.2009.297).

Figures in this Article

A global emergence and rapid spread of oseltamivir-resistant influenza A(H1N1) viruses carrying a neuraminidase (NA) gene with an H274Y (N2 numbering; H275Y in N1 numbering) amino acid substitution has been observed since January 2008.13 Viruses carrying this mutation are presumed to exhibit attenuated pathogenicity,4 compromised transmission,5 and reduced lethality.6 However, current widespread circulation of oseltamivir-resistant influenza A(H1N1) viruses associated with typical influenza illnesses and viral pneumonia suggest that these viruses retain significant transmissibility and pathogenicity.2,3,7,8 While these resistant variants may cause significant mortality and retain efficient transmission, these properties have not yet been firmly established.

In February 2008, an outbreak of influenza A(H1N1) virus occurred in a medical ward at a Dutch university hospital. Clinical specimens from symptomatic contact patients of the presumed index patient were tested by influenza polymerase chain reaction (PCR) and sequences were further analyzed. Medical records of contact patients with related influenza virus infection were reviewed for underlying disease, clinical findings, and outcome. Screening specimens were obtained from contacts of the last outbreak patient (patient 4) to rule out further spread of the virus.

Influenza Virus Diagnostics

Influenza virus detection was performed on clinical respiratory specimens using rapid antigen testing and PCR (as described previously9), along with viral culture. Antigenic characterization (hemagglutination inhibition testing) and phenotypic oseltamivir and zanamivir susceptibility (IC50, concentration of drug needed to inhibit enzyme activity by 50%) were determined as described.10,11 Viral RNA extracted from clinical specimens was further transcribed and amplified. Hemagglutinin chain 1 (HA1) and neuraminidase gene sequences from patients with confirmed influenza virus infection were analyzed and phylogenetically related to other 2007-2008 seasonal influenza viruses obtained at the hospital or sentinel surveillance isolates collected nationwide using Bionumerics version 5.1 (Applied Maths, Sint-Martens-Latem, Belgium).

Ethical Considerations

The investigation of this outbreak did not involve any planned activity that could have been reviewed prospectively by an institutional review board or ethics committee. Nevertheless, all necessary precautions were taken to prevent identification of the patients and health care workers involved. The physicians involved all gave signed permission to use clinical data and were informed on the outcome of the investigation. All of them agreed with the intention to publication. Details including the age and role of the health care workers were omitted or described in a nonspecific way, while we also took care to preserve all clinically meaningful details. The chairman of the ethics committee at the Leiden University Medical Center was consulted retrospectively and agreed to the approach as described for reporting the clinical information obtained during the investigation and included herein.

Nosocomial Influenza A(H1N1) Virus Outbreak

The clinical characteristics and timeline of the outbreak of influenza A(H1N1) virus are shown in the Table and in Figure 1, respectively. Community-acquired oseltamivir-resistant influenza A(H1N1) virus with NA gene H274Y mutation, isolated from the presumed index case, was detected in 3 additional patients (mean oseltamivir IC50, 484 nM; mean zanamivir IC50,1.1 nM). The presumed index case (patient 1), who was vaccinated for 2007-2008 seasonal influenza and received high-dose (cumulative) prednisolone therapy for systemic lupus erythematosus, was admitted to the hospital on January 29, 2008, with fever, cough, dyspnea, and lymphocytopenia. Mechanical ventilation and broad-spectrum empirical antibacterial treatment were initiated for acute respiratory failure and apparent pulmonary consolidations by chest radiography. Oseltamivir administration was initiated following influenza A virus detection using rapid antigen testing and PCR along with contact and droplet isolation. No other viral and bacterial respiratory pathogens were detected and blood cultures remained negative. The patient was transferred to a medical ward following clinical improvement on February 1 and isolation precautions were continued for the duration of symptoms until February 3. Viral clearance was confirmed by PCR upon lymphocyte reconstitution in an outpatient setting on March 4, 2008.

Place holder to copy figure label and caption
Figure 1. Epidemic Curve by Date of Onset of Symptoms and Timeline of Influenza A(H1N1) Nosocomial Infections
Graphic Jump Location

During influenza A(H1N1) virus outbreak, all 4 infected patients were admitted in the same department and never shared rooms. LRTI indicates lower respiratory tract infection; NA, neuraminidase; PCR, polymerase chain reaction; and URTI, upper respiratory tract infection.

Table Graphic Jump LocationTable. Clinical Characteristics of 4 Hospitalized Patients With Oseltamivir-Resistant Influenza A(H1N1) Virus Infection

Two hematopoietic stem cell transplant recipients (patient 2 and patient 4) and an 89-year-old elderly patient (patient 3) developed hospital-acquired influenza A virus infection (Table). These patients were present at the same time as the index patient at the medical ward without isolation procedures (Figure 1), but the 4 patients never shared rooms. Patient 2 developed mild influenza symptoms with rapid viral clearance, whereas both patients 3 and 4 developed pulmonary consolidations and fatal respiratory failure with viral excretion under broad-spectrum antibacterial therapy. The influenza vaccination status of these patients is not known. The attribution of mortality to influenza was supported by detection of influenza A(H1N1) viral RNA from postmortem pulmonary tissue and histopathological pulmonary findings consistent with viral pneumonia in patient 4, with the exclusion of other pathogens. Further nosocomial spread to other contacts within the wards was excluded by PCR.

Phylogenetic Relationship

HA1 gene and NA gene sequence analysis of viruses from the 4 outbreak patients revealed indistinguishable nucleotide sequences and phylogenetic clustering (Figure 2). In addition to NA gene H274Y substitution, a rare T284A substitution was sequenced (NA gene sequence GenBank accession numbers AB476754, AB476755, AB476756, AB462370) and could therefore be recognized as a marker for transmission. An unlinked national surveillance isolate (A/NL/088/08) with identical HA1 gene nucleotide sequence revealed no NA gene phylogenetic clustering and lacked the specific T284A substitution. The NA gene T284A mutation was not observed in other 2007-2008 seasonal influenza A(H1N1) viruses or in worldwide sequences submitted to public databases, reinforcing the unique genetic relatedness of this influenza A(H1N1) virus patient cluster.

Place holder to copy figure label and caption
Figure 2. Phylogenetic Relationship of Nosocomial Patient Cluster Influenza A(H1N1) Viruses and Other 2007-2008 Seasonal Influenza A Viruses
Graphic Jump Location

Influenza A(H1N1) virus HA1 gene sequences obtained from the patient cluster (n=4, marked as hospitalized cluster patient 1, 2, 3, 4) were related to available unlinked 2007-2008 seasonal influenza A(H1N1) viral sequences obtained at the hospital (n=1, marked as unlinked hospitalized patient), surveillance isolates collected within a 10-km regional zone from the hospital (n=3, marked as regional), nationwide collected surveillance isolates (n=17, marked as nationwide), and vaccine strain A/Brisbane/59/2007. The HA1 gene (nucleotides 1-1071) neighbor-joining tree was rooted on vaccine strain A/Solomon Islands/3/2006. Viral sequence Genbank accession numbers are depicted for hospitalized patients.

Health Care Workers

Five health care workers developed influenza-like illness (onset February 4-6, 2008) during admission of the presumed index patient. One health care worker, vaccinated for the 2007-2008 seasonal influenza, developed influenza-like illness following established contact with the index patient and continued working. Four other health care workers took sick leave within 24 to 48 hours of symptom onset. However, no samples for influenza testing were obtained from any of these 5 health care workers. Thus, their role in possibly contributing to this apparent nosocomial spread of influenza could not be confirmed.

Viruses cultured from the patient cluster revealed a poor antigenic match with the 2007-2008 vaccine reference strain A/Solomon Islands/3/06 (approximately 16-fold difference by duplicate hemagglutination inhibition testing). This may in part explain the sustained susceptibility and infectivity of the vaccinated index patient and suspected health care worker resulting in the hospital outbreak.

This outbreak provided evidence that circulating oseltamivir-resistant influenza A(H1N1) viruses with NA gene H274Y mutation are transmitted between humans. Limitations of this observational study include the small number of patients, therefore the findings require careful interpretation and do not allow conclusions on the frequency of this complication in hospital settings. The vaccination status of secondarily infected cases (patients 2, 3, and 4) remained unclarified. Information on the mechanism of spread was limited by the circumstances in this study. Data obtained from clinical specimens suggest different routes of transmission; however, this could not be further explored because the sampling of symptomatic health care workers and testing of fomites are not routinely performed. However, analysis of data obtained from clinical specimens provided some insight to different routes of transmission and suggested a limited viral spread.

Early identification and prolonged isolation precautions appear prudent in the care for infected immunocompromised patients to prevent nosocomial influenza virus outbreaks. This study confirmed that circulating H274Y-mutated A(H1N1) viruses can retain significant pathogenicity and lethality, as shown in these elderly or immunocompromised patients with lymphocytopenia, underlining the urgency for the introduction of new effective antiviral agents and therapeutic strategies.12

Corresponding Author: Jairo Gooskens, MD, Department of Medical Microbiology, E4-65, Leiden University Medical Center, PO Box 9600, 2300 RC, Leiden, the Netherlands (j.gooskens@lumc.nl).

Published Online: March 2, 2009 (doi:10.1001/jama.2009.297).

Author Contributions: Dr Gooskens had full access to all of the data in the study and takes responsibility for the integrity of the data and the accuracy of the data analysis.

Study concept and design: Gooskens, Claas, van den Broek, Kroes.

Acquisition of data: Gooskens, Jonges, Claas.

Analysis and interpretation of data: Gooskens, Jonges, Claas, Meijer, Kroes.

Drafting of the manuscript: Gooskens, van den Broek.

Critical revision of the manuscript for important intellectual content: Gooskens, Jonges, Claas, Meijer, Kroes.

Statistical analysis: Jonges.

Obtained funding: Meijer.

Administrative, technical, or material support: Jonges, Claas.

Study supervision: Gooskens, Claas, Meijer, van den Broek, Kroes.

Financial Disclosures: Mr Jonges reported being funded by the Impulse Veterinary Avian Influenza Research in the Netherlands program of the Economic Structure Enhancement Fund. No other authors reported financial disclosures.

Funding/Support:The Dutch GP surveillance network provided respiratory specimens for virological surveillance of influenza-like illness from which viral sequences were included in this analysis for comparison.

Role of the Sponsor: The Economic Structure Enhancement Fund and the Dutch GP surveillance network were not involved in the design and conduct of the study; collection, management, analysis, and interpretation of the data; or in the preparation, review, or approval of the manuscript.

Additional Contributions: We thank Gé A. Donker, PhD, NIVEL Netherlands Institute for Health Services Research, who is the coordinator of the Dutch GP sentinel surveillance network. Dr Donker was not financially compensated for providing the surveillance isolates.

Lackenby A, Hungnes O, Dudman SG,  et al.  Emergence of resistance to oseltamivir among influenza A(H1N1) viruses in Europe.  Euro Surveill. 2008;13(5):pii8026
PubMed
World Health Organization.  Epidemic and pandemic alert response: influenza A(H1N1) virus resistance to oseltamivir (December 30, 2008). http://www.who.int/csr/disease/influenza/h1n1_table/en/index.html. Accessibility verified February 10, 2009
Centers for Disease Control and Prevention.  CDC issues interim recommendations for the use of influenza antiviral medications in the setting of oseltamivir resistance among circulating influenza A (H1N1) viruses, 2008-09 influenza season (December 19, 2008). http://www2a.cdc.gov/HAN/ArchiveSys/ViewMsgV.asp?AlertNum=00279. Accessibility verified February 10, 2009
Ives JA, Carr JA, Mendel DB,  et al.  The H274Y mutation in the influenza A/H1N1 neuraminidase active site following oseltamivir phosphate treatment leave virus severely compromised both in vitro and in vivo.  Antiviral Res. 2002;55(2):307-317
PubMed   |  Link to Article
Herlocher ML, Truscon R, Elias S,  et al.  Influenza viruses resistant to the antiviral drug oseltamivir: transmission studies in ferrets.  J Infect Dis. 2004;190(9):1627-1630
PubMed   |  Link to Article
Yen HL, Ilyushina NA, Salomon R, Hoffmann E, Webster RG, Govorkova EA. Neuraminidase inhibitor-resistant recombinant A/Vietnam/1203/04 (H5N1) influenza viruses retain their replication efficiency and pathogenicity in vitro and in vivo.  J Virol. 2007;81(22):12418-12426
PubMed   |  Link to Article
Nicoll A, Ciancio B, Kramarz P.Influenza Project Team.  Observed oseltamivir resistance in seasonal influenza viruses in Europe interpretation and potential implications.  Euro Surveill. 2008;13(5):pii8025
PubMed
van der Vries E, van den Berg B, Schutten M. Fatal oseltamivir-resistant influenza virus infection.  N Engl J Med. 2008;359(10):1074-1076
PubMed   |  Link to Article
Templeton KE, Scheltinga SA, Beersma MF, Kroes AC, Claas EC. Rapid and sensitive method using multiplex real-time PCR for diagnosis of infections by influenza A and influenza B viruses, respiratory syncytial virus, and parainfluenza viruses 1, 2, 3, and 4.  J Clin Microbiol. 2004;42(4):1564-1569
PubMed   |  Link to Article
Gooskens J, Kuiken T, Claas EC,  et al.  Severe influenza resembling hemorrhagic shock and encephalopathy syndrome.  J Clin Virol. 2007;39(2):136-140
PubMed   |  Link to Article
Potier M, Mameli L, Bélisle M, Dallaire L, Melançon SB. Fluorometric assay of neuraminidase with a sodium (4-methylumbelliferyl-alpha-D-N acetylneuraminate) substrate.  Anal Biochem. 1979;94(2):287-296
PubMed   |  Link to Article
Hayden F. Developing new antiviral agents for influenza treatment: what does the future hold?  Clin Infect Dis. 2009;48:(suppl 1)  S3-S13
PubMed   |  Link to Article

Figures

Place holder to copy figure label and caption
Figure 1. Epidemic Curve by Date of Onset of Symptoms and Timeline of Influenza A(H1N1) Nosocomial Infections
Graphic Jump Location

During influenza A(H1N1) virus outbreak, all 4 infected patients were admitted in the same department and never shared rooms. LRTI indicates lower respiratory tract infection; NA, neuraminidase; PCR, polymerase chain reaction; and URTI, upper respiratory tract infection.

Place holder to copy figure label and caption
Figure 2. Phylogenetic Relationship of Nosocomial Patient Cluster Influenza A(H1N1) Viruses and Other 2007-2008 Seasonal Influenza A Viruses
Graphic Jump Location

Influenza A(H1N1) virus HA1 gene sequences obtained from the patient cluster (n=4, marked as hospitalized cluster patient 1, 2, 3, 4) were related to available unlinked 2007-2008 seasonal influenza A(H1N1) viral sequences obtained at the hospital (n=1, marked as unlinked hospitalized patient), surveillance isolates collected within a 10-km regional zone from the hospital (n=3, marked as regional), nationwide collected surveillance isolates (n=17, marked as nationwide), and vaccine strain A/Brisbane/59/2007. The HA1 gene (nucleotides 1-1071) neighbor-joining tree was rooted on vaccine strain A/Solomon Islands/3/2006. Viral sequence Genbank accession numbers are depicted for hospitalized patients.

Tables

Table Graphic Jump LocationTable. Clinical Characteristics of 4 Hospitalized Patients With Oseltamivir-Resistant Influenza A(H1N1) Virus Infection

References

Lackenby A, Hungnes O, Dudman SG,  et al.  Emergence of resistance to oseltamivir among influenza A(H1N1) viruses in Europe.  Euro Surveill. 2008;13(5):pii8026
PubMed
World Health Organization.  Epidemic and pandemic alert response: influenza A(H1N1) virus resistance to oseltamivir (December 30, 2008). http://www.who.int/csr/disease/influenza/h1n1_table/en/index.html. Accessibility verified February 10, 2009
Centers for Disease Control and Prevention.  CDC issues interim recommendations for the use of influenza antiviral medications in the setting of oseltamivir resistance among circulating influenza A (H1N1) viruses, 2008-09 influenza season (December 19, 2008). http://www2a.cdc.gov/HAN/ArchiveSys/ViewMsgV.asp?AlertNum=00279. Accessibility verified February 10, 2009
Ives JA, Carr JA, Mendel DB,  et al.  The H274Y mutation in the influenza A/H1N1 neuraminidase active site following oseltamivir phosphate treatment leave virus severely compromised both in vitro and in vivo.  Antiviral Res. 2002;55(2):307-317
PubMed   |  Link to Article
Herlocher ML, Truscon R, Elias S,  et al.  Influenza viruses resistant to the antiviral drug oseltamivir: transmission studies in ferrets.  J Infect Dis. 2004;190(9):1627-1630
PubMed   |  Link to Article
Yen HL, Ilyushina NA, Salomon R, Hoffmann E, Webster RG, Govorkova EA. Neuraminidase inhibitor-resistant recombinant A/Vietnam/1203/04 (H5N1) influenza viruses retain their replication efficiency and pathogenicity in vitro and in vivo.  J Virol. 2007;81(22):12418-12426
PubMed   |  Link to Article
Nicoll A, Ciancio B, Kramarz P.Influenza Project Team.  Observed oseltamivir resistance in seasonal influenza viruses in Europe interpretation and potential implications.  Euro Surveill. 2008;13(5):pii8025
PubMed
van der Vries E, van den Berg B, Schutten M. Fatal oseltamivir-resistant influenza virus infection.  N Engl J Med. 2008;359(10):1074-1076
PubMed   |  Link to Article
Templeton KE, Scheltinga SA, Beersma MF, Kroes AC, Claas EC. Rapid and sensitive method using multiplex real-time PCR for diagnosis of infections by influenza A and influenza B viruses, respiratory syncytial virus, and parainfluenza viruses 1, 2, 3, and 4.  J Clin Microbiol. 2004;42(4):1564-1569
PubMed   |  Link to Article
Gooskens J, Kuiken T, Claas EC,  et al.  Severe influenza resembling hemorrhagic shock and encephalopathy syndrome.  J Clin Virol. 2007;39(2):136-140
PubMed   |  Link to Article
Potier M, Mameli L, Bélisle M, Dallaire L, Melançon SB. Fluorometric assay of neuraminidase with a sodium (4-methylumbelliferyl-alpha-D-N acetylneuraminate) substrate.  Anal Biochem. 1979;94(2):287-296
PubMed   |  Link to Article
Hayden F. Developing new antiviral agents for influenza treatment: what does the future hold?  Clin Infect Dis. 2009;48:(suppl 1)  S3-S13
PubMed   |  Link to Article
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